Molecular
Diagnostic Laboratory
Nordic
Centre of Excellence in Molecular Medicine
2006 | 2005
| 2004 | 2003
|1996- 2002| By
author | Supplementary
data | NormFinder |
PhDs
Supplementary data for selected publications
Thykjaer,T., Workman,C., Kruhoffer,M., Demtroder,K.,
Wolf,H., Andersen,L.D., Frederiksen,C.M., Knudsen,S., Orntoft,T.F. Identification of gene expression patterns in superficial and invasive human
bladder cancer. Cancer Res.. 61(6): 2492-2499.
2001. PubMed
List of genes (figure 4)
Cluster
& Number |
Locus |
Accession |
Description |
| Cell Cycle | |||
| A1 | HSSTHPKD | X66363 | H.sapiens mRNA PCTAIRE-1 for serine/threonine protein kinase |
| A2 | HUMORFAAA | D21063 | Human mRNA for KIAA0030 "gene," partial cds |
| A3 | HSCYCLINA | X51688 | Human mRNA for cyclin A |
| A4 | NM 003508 | U82169 | Human frizzled homolog (FZD3) "mRNA," complete cds. |
| A5 | HUMCMYBB | M13666 | Human c-myb mRNA, 3' end. |
| A6 | HUMSCFA1 | M73239 | "Human (clone SF1) hepatocyte growth factor (HGF) ""mRNA,"" complete cds" |
| A7 | HUMCLNC | M74093 | Human cyclin mRNA |
| A8 | SMARCC2 | U66616 | Human SWI/SNF complex 170 KDa subunit (BAF170) "mRNA," complete cds |
| A9, C3 | HSU73379 | U73379 | Human cyclin-selective ubiquitin carrier protein "mRNA," complete cds |
| A10 | HUMTTK | M86699 | Human kinase (TTK) "mRNA," complete cds |
| Oncogenes & GFs | |||
| A11 | HUMMYCPOA | M13929 | "Human c-myc-P64 ""mRNA,"" initiating from promoter ""P0,"" (HLmyc2.5) partial cds" |
| A12 | HUMRAB6A | M28212 | Homo sapiens GTP-binding protein (RAB6) "mRNA," complete cds |
| A13 | HUMTDGF3A | M96956 | "Human (clone CR-3) teratocarcinoma-derived growth factor 3 (TDGF3) ""mRNA,"" complete cds" |
| A14 | HUMPKS | M13829 | "Human putative raf related protein (pks/a-raf) ""mRNA,"" partial cds" |
| A15 | HUMHBNF1 | M57399 | Human nerve growth factor (HBNF-1) "mRNA," complete cds |
| A16 | HSCKSHS2 | X54942 | H.sapiens ckshs2 mRNA for Cks1 protein homologue |
| A17 | HUMEPR1NP | L32866 | Human effector cell protease receptor-1 (EPR-1) "gene," partial cds |
| A18 | HSU86136 | U86136 | Human telomerase-associated protein TP-1 "mRNA," complete cds |
| A19 | HSU22376 | U22376 | c-myb gene extracted from Human (c-myb) "gene," complete primary "cds," and five complete alternatively spliced cds |
| A20 | HUMRB1MRNA | L41870 | Homo sapiens retinoblastoma susceptibility protein (RB1) mRNA and mutations |
| A21 | HUMGPCR | L06797 | "Human (clone L5) orphan G protein-coupled receptor ""mRNA,"" complete cds" |
| A22 | HUMGHVA | J03756 | Human growth hormone-variant (GH1) and growth hormone-variant-2 (GH2) "mRNA," complete cds |
| Immunology | |||
| A23, C22, C32 | HS18D | X57351 | Human 1-8D gene from interferon-inducible gene family, Human 1-8D gene from interferon-inducible gene family |
| A24 | HSNGALGEN | X99133 | H.sapiens NGAL gene |
| A25 | HUMIFNRF1A | L05072 | "Homo sapiens interferon regulatory factor 1 ""gene,"" complete cds" |
| A26, C28, C29 | HUMIGL122 | M34516 | Human omega light chain protein 14.1 (Ig lambda chain related) gene |
| A27, C20 | HUMIGGK | M63438 | "Human Ig rearranged gamma chain ""mRNA,"" V-J-C region and complete cds" |
| A28, C23 | S71043 | S71043 | Ig alpha 2=immunoglobulin A heavy chain allotype 2 {constant "region," germ line} "[human," peripheral blood "neutrophils," "Genomic," 1799 nt] |
| A29, C19 | HUMDQA1A | M34996 | "Human MHC cell surface glycoprotein (HLA-DQA) ""mRNA,"" 3'end" |
| A30, C26 | HSHL07 | X00274 | Human gene for HLA-DR alpha heavy chain a class II antigen (immune response gene) of the major histocompatibility complex (MHC) |
| A31, C15 | HSHLASBA | X03100 | Human HLA-SB(DP) alpha gene. |
| A32, C21 | HSIGVL009 | X57809 | Human rearranged immunoglobulin lambda light chain mRNA |
| A33 | HSCD14R | X13334 | Human CD14 mRNA for myelid cell-specific leucine-rich glycoprotein |
| A34, C27 | HUMMHDPL | M57466 | "Human MHC class II HLA-DP light chain ""mRNA,"" complete cds" |
| A35, C31 | HUM927A | J04164 | Human interferon-inducible protein 27-Sep "mRNA," complete cds |
| A36 | HUMC1QB2 | K03430 | Human complement C1q B-chain gene |
| A37 | HSLCA | Y00062 | Human mRNA for T200 leukocyte common antigen "(CD45," LC-A) |
| A38 | HUMTCBYY | M12886 | Human T-cell receptor active beta-chain "mRNA," complete cds |
| A39 | HUME16GEN | M80244 | Human E16 "mRNA," complete cds |
| A40 | HUMLNHR | M25280 | Human lymph node homing receptor "mRNA," complete cds |
| Oncogenes & GFs | |||
| A41 | HUMSLK | M14676 | Human src-like kinase (slk) "mRNA," complete cds |
| A42 | HUMTFSL1A | L39059 | Homo sapiens transcription factor SL1 "mRNA," complete cds |
| A43 | HUMLYN | M16038 | Human lyn mRNA encoding a tyrosine kinase |
| A44 | HUMTGFBA | M38449 | "Human transforming growth factor-beta ""mRNA,"" complete ""cds,"" clone pTGF-beta-trp114" |
| Immunology | |||
| A46 | HSPIR | X73079 | Homo sapiens encoding Polymeric immunoglobulin receptor |
| A47 | HSFAS47 | X83492 | |
| A47 | HSFLA1A | Y00796 | Human mRNA for leukocyte-associated molecule-1 alpha subunit (LFA-1 alpha subunit) |
| A48, C12 | HUMAPOE | M12529 | Human apolipoprotein E "mRNA," complete cds |
| A49 | S69115 | S69115 | granulocyte colony-stimulating factor induced gene "[human," CML "patient," bone marrow mononuclear "cells," "mRNA," 833 nt] |
| A50 | HUMLAP | M15395 | "Human leukocyte adhesion protein ""(LFA-1/Mac-1/p150,95"" family) beta subunit mRNA" |
| A51 | HUMHCAMAP8 | D28915 | Human gene for hepatitis C-associated microtubular aggregate protein p44 |
| A52 | HUMIIP | J03909 | Human gamma-interferon-inducible protein (IP-30) "mRNA," complete cds |
| Cell Adhesion | |||
| B1 | HSLAMB3S17 | U17760 | Human laminin S B3 chain (LAMB3) gene, exon 23, and complete cds. |
| B2 | HUMHAAA | M65292 | "Human factor H homologue ""mRNA,"" complete cds" |
| B3 | HUMINTA3A | M59911 | Human integrin alpha-3 chain "mRNA," complete cds |
| B4 | HUMLAM101 | M61916 | Human laminin B1 chain "mRNA," complete cds |
| B5 | HUMMGC24 | D14043 | Human mRNA for "MGC-24," complete cds |
| B6 | HSINTB4R | X53587 | Human mRNA for integrin beta 4 |
| B7 | HG2981-HT3127 | HG2981-HT3127 | """Epican,"" Alt. Splice 11" |
| B8 | HSPCAD | X63629 | H.sapiens mRNA for p cadherin |
| B9 | HUMLAMR | M14199 | "Human laminin receptor (2H5 epitope) ""mRNA,"" 5' end" |
| B10 | HSHFATPRO | X87241 | H.sapiens mRNA for hFat protein |
| B11, D8 | HSECAD3 | Z35402 | H.sapiens gene encoding "E-cadherin," exon 3 and joined CDS |
| Transcription Factors | |||
| B12 | HDAC2 | XM004370 | Homo sapiens histone deacetylase 2 (HDAC2) |
| B13 | HG1515-HT1515 | HG1515-HT1515 | Transcription Factor Btf3b |
| B14, D9 | HSU20734 | U20734 | "Human transcription factor junB (junB) ""gene,"" 5' region and complete cds" |
| B15 | HSU29175 | U29175 | Human transcriptional activator (BRG1) mRNA, complete cds. |
| Proteinases | |||
| B16 | HSU04313 | U04313 | Human maspin "mRNA," complete cds |
| B17 | D87258 | D87258 | Human cancellous bone osteoblast mRNA for serin protease with IGF-binding "motif," complete cds |
| B18, D7 | HUMCTSE | J05036 | "Human cathepsin E ""mRNA,"" complete cds" |
| B19 | HUMCTSE09 | M84424 | Human cathepsin E (CTSE) gene |
| B20 | HSU41766 | U41766 | "Human metalloprotease/disintegrin/cysteine-rich protein precursor (MDC9) ""mRNA,"" complete cds" |
| B21 | HSCYSTATS | X54667 | |
| Proliferation | |||
| C1 | HG2566-HT4867 | HG2566-HT4867 | Microtubule-Associated Protein Tau, Alt. Splice 5, Exon 4a |
| C2 | HUMP2A | J02902 | Human protein phosphatase 2A regulatory subunit alpha-isotype (alpha-PR65) mRNA, complete cds |
| C4 | HUMOP18A | M31303 | Human oncoprotein 18 (Op18) gene, complete cds. |
| C5 | HSU12779 | U12779 | Human MAP kinase activated protein kinase 2 mRNA, complete cds |
| Immunology | |||
| C6 | HUMIGLR141 | M27749 | "Human immunoglobulin-related 14.1 protein ""mRNA,"" complete cds" |
| C7 | HUMMHDOA | M29335 | Human MHC class II DO-alpha mRNA, partial cds, Human MHC class II DO-alpha mRNA, partial cds |
| C8 | HUMIL2RG | D11086 | Human mRNA for interleukin 2 receptor gamma chain |
| C9 | HSMLN62 | X80200 | H.sapiens MLN62 mRNA |
| C11 | HSMDNCF | Y00787 | Human mRNA for MDNCF (monocyte-derived neutrophil chemotactic factor) |
| C13 | HUMMHDC3B | K02405 | Human MHC class II HLA-DC-3-beta gene (DR3,3) |
| C14 | HG1872-HT1907 | HG1872-HT1907 | Major Histocompatibility "Complex," Dg |
| C16 | HSHLDQWB | X03068 | Human mRNA for HLA-D class II antigen DQw1.1 beta chain |
| C17 | HUMIAIG6 | M13560 | Human Ia-associated invariant gamma-chain gene |
| C18 | HUMIGHEPAH | M87789 | "Human (hybridoma H210) anti-hepatitis A IgG variable ""region,"" constant ""region,"" complementarity-determining regions ""mRNA,"" complete cds" |
| C24 | HG3576-HT3779 | HG3576-HT3779 | "Major Histocompatibility ""Complex,"" Class Ii Beta W52" |
| C25 | HUMMHDRA1C | M33600 | Human MHC class II HLA-DR-beta-1 (HLA-DRB1) mRNA, complete cds |
| C30 | HUMPREBLYM | L04270 | Homo sapiens (clone CD18) tumor necrosis factor receptor 2 related protein "mRNA," complete cds |
| Tumor Inhibitors | |||
| D1 | AB000584 | AB000584 | Human mRNA for TGF-beta superfamily protein, complete cds |
| D2 | HUMSUIISO | L26247 | Homo sapiens sui1iso1 mRNA, complete cds |
| Growth Factors | |||
| D3 | HG3543-HT3739 | HG3543-HT3739 | Insulin-Like Growth Factor 2 |
| D4 | HUMGFIL2 | J03242 | "Human insulin-lke growth factor II ""mRNA,"" complete cds" |
| D5 | HUMFFI2B | M17863 | "Human preproinsulin-like growth factor II (IGF-II) variant ""mRNA,"" complete cds" |
| D6 | HSKRT8 | X74929 | H.sapiens KRT8 mRNA for keratin 8 |
| Ribosomal | |||
| D10 | HUMRSP | D23660 | Human mRNA for ribosomal protein, complete cds |
| D11 | HG4319-HT4589 | HG4319-HT4589 | Ribosomal Protein L5 |
| D12 | D87735 | D87735 | Human mRNA for ribosomal protein L14, complete cds |
| D13 | HSRPS8 | X67247 | H.sapiens rpS8 gene for ribosomal protein S8 |
| D14 | HG3549-HT3751 | HG3549-HT3751 | WilmS Tumor-Related Protein |
| D15 | HUML12A | L06505 | Human ribosomal protein L12 mRNA, complete cds |
| D16 | HUMRPZH21 | M15661 | Human ribosomal protein "mRNA," complete cds |
| D17 | HG4542-HT4947 | HG4542-HT4947 | Ribosomal Protein L10 |
| D18 | HG613-HT613 | HG613-HT613 | Ribosomal Protein S12 |
| D19 | HUMRPS17A | M18000 | Human ribosomal protein S17 gene, complete cds |
| D20 | HSRBPRL7A | X57959 | H.sapiens mRNA for ribosomal protein L7 |
| D21 | HSU14970 | U14970 | Human ribosomal protein S5 mRNA, complete cds |
| D22 | HSRPL31 | X15940 | Human mRNA for ribosomal protein L31 |
| D23 | HSRPL6AA | X69391 | H.sapiens mRNA for ribosomal protein L6 |
| D24 | HUMCYS3A3 | M27891 | Human cystatin C (CST3) gene |
| D25 | D79205 | D79205 | Human mRNA for ribosomal protein L39, complete cds |
| D26 | HSU58682 | U58682 | Human ribosomal protein S28 mRNA, complete cds |
| D27 | HSU25789 | U25789 | Human ribosomal protein L21 mRNA, complete cds |
| D28 | HSPBR4 | L21954 | Human peripheral benzodiazepine receptor gene |
| D29 | HUMRPS25 | M64716 | Human ribosomal protein S25 mRNA, complete cds |
| D30 | HSU14973 | U14973 | Human ribosomal protein S29 mRNA, complete cds |
| D31 | HSL35A | X52966 | Human mRNA for ribosomal protein L35a |
| D32 | HSRPS11 | X06617 | Human mRNA for ribosomal protein S11 |
| Immunology | |||
| D33 | S82297 | S82297 | beta 2-microglobulin {11bp deleted between nucleotides 98-99} [human, colon cancer cell line HCT, mRNA Mutant, 416 nt] |
| D34 | HUMHLABAA | D49824 | Human HLA-B null allele mRNA, Human HLA-B null allele mRNA |
| D35 | HUMHLAAD | D32129 | Human mRNA for HLA class-I (HLA-A26) heavy chain, complete cds (clone cMIY-1) |
| D36 | HG2917-HT3061 | HG2917-HT3061 | "Major Histocompatibility ""Complex,"" Class ""I,"" E (Gb:M21533)" |
| D37 | HUMHLAAX | M94880 | Human MHC class I (HLA-A*8001) mRNA |
| Ribosomal | |||
| D38 | HG384-HT384 | HG384-HT384 | Ribosomal Protein L26 |
| D39 | HUMRPL18A | L11566 | Homo sapiens ribosomal protein L18 (RPL18) mRNA, complete cds |
| D40 | HUMRPL34A | L38941 | Homo sapiens ribosomal protein L34 (RPL34) mRNA, complete cds |
| D41 | HSHUMS3 | X55715 | Human Hums3 mRNA for 40S ribosomal protein s3 |
| D42 | HSL23MR | X53777 | Human L23 mRNA for putative ribosomal protein |
| D43 | HSL17ARP | X55954 | Human mRNA for HL23 ribosomal protein homologue |
| D44 | HSRPRNA | X62691 | H.sapiens mRNA for ribosomal protein (homologuous to yeast S24) |
| D45 | HSU14969 | U14969 | Human ribosomal protein L28 mRNA, complete cds |
| D46 | HSU14968 | U14968 | Human ribosomal protein L27a mRNA, complete cds |
| D47 | HUMRPS24A | M31520 | Human ribosomal protein S24 mRNA, Human ribosomal protein S24 mRNA, Human ribosomal protein S24 mRNA |
| D48 | HSRBPL8 | Z28407 | H.sapiens mRNA for ribosomal protein L8 |
| D49 | HUMPPARP1 | M17886 | Human acidic ribosomal phosphoprotein P1 mRNA, complete cds |
| D50 | HUMRPS14 | M13934 | RPS14 gene (unknown protein) extracted from Human ribosomal protein S14 gene, complete cds, RPS14 gene (unknown protein) extracted from Human ribosomal protein S14 gene, complete cds |
| D51 | HSU09953 | U09953 | Human ribosomal protein L9 mRNA, complete cds |
| D52 | HSU14971 | U14971 | Human ribosomal protein S9 "mRNA," complete cds |
| D53 | HSU14972 | U14972 | Human ribosomal protein S10 mRNA, complete cds |
| D54 | HSRPL3A | X73460 | H.sapiens mRNA for ribosomal protein L3 |
| D55 | HSRPL11 | X79234 | H.sapiens mRNA for ribosomal protein L11 |
| D56 | HSU12465 | U12465 | Human ribosomal protein L35 mRNA, complete cds |
| D57 | HSRPS18 | X69150 | H.sapiens mRNA for ribosomal protein S18. |
| D58 | HUMRPL37A | L06499 | Homo sapiens ribosomal protein L37a (RPL37A) mRNA, complete cds |
| D59 | HUMRPS6B | M77232 | Human ribosomal protein S6 gene, complete cds and flanking regions |
| D60 | HSRPS7 | Z25749 | H.sapiens gene for ribosomal protein S7 |
Updated:
26 April, 2010
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